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Table for the annotation of Barcode

Source: R/annotation_table.R
annotation_table.Rd

Table for the annotation of Barcode

Usage

data(annotation_table)

Format

A data frame with 5320 rows and 2 columns obtained from a loss-of-function genetic screening. This table is used to store information about the shRNAs:

Gene

It Contains the gene name

Barcode

It contains an ID that identify each barcode (it is an unique identifier for an shRNA). I t can be use to merge the annotation table with t he count table

Gene_ID

It Contains a unique Gene ID

Sequence

It contains the cDNA sequence of the shRNA associated to the barcode

Library

It contains the library from which the shRNA come from. In this case is a pooled from https://cellecta.com/cellecta