Plot number of barcode lost for gene — plot_barcode_lost_for

This function plots the number of barcodes lost in each sample for each gene. Usually in a genetic screening each gene is is associated with multiple shRNAs and so barcodes. For this reason a reasonable number of barcodes associated with the gene has to be retrieved in order to have a robust result. Visualizing the number of genes that have lost lot's of barcode is a Quality Check procedure in order to be aware of the number of barcode for the hit identified.

Usage

plot_barcode_lost_for_gene(screenR_Object, facet = TRUE, samples)

Arguments

screenR_Object: The ScreenR object obtained using the create_screenr_object
facet: A boolean to use the facet.
samples: A vector of samples that as to be visualize

Value

Return the plot displaying the number of barcode lost for each gene in each sample.

Examples

object <- get0("object", envir = asNamespace("ScreenR"))

plot_barcode_lost_for_gene(object,
    samples = c("Time3_A", "Time3_B")
)

plot_barcode_lost_for_gene(object,
    samples = c("Time3_A", "Time3_B"),
    facet = FALSE
)