HAP1 CRISPR-Cas9 knockout screen: annotation table — hap1_annotation_table • ScreenR

Annotation of the sgRNAs of hap1_count_table, with their genomic position (TKOv3 library annotation distributed with BAGEL2 for CRISPRcleanR).

Usage

data(hap1_annotation_table)

Format

A data frame with 13600 rows (sgRNAs) and 7 columns:

Barcode: The sgRNA identifier, as in hap1_count_table.
Gene: The symbol of the targeted gene (EGFP, LacZ and luciferase for the controls).
Chromosome, Strand, Start, End: The position of the sgRNA target (NA for the controls).
Class: "core essential" or "non-essential" for the reference genes (see hart_reference_genes), "control" for the controls and "other" for the other genes.

Source

Hart T, Tong AHY, Chan K, et al. (2017). G3 7:2719-2727. doi:10.1534/g3.117.041277

See also

hap1_count_table

Examples

data(hap1_annotation_table)
table(hap1_annotation_table$Class)
#> 
#>        control core essential  non-essential          other 
#>            140           2524           3067           7869